Bug 7 - Formatted Files for one rotamer available for download but files are empty. Other rotamers are fine
Formatted Files for one rotamer available for download but files are empty. O...
Status: RESOLVED WONTFIX
Product: Legacy Tools Issues
Classification: Legacy Tools
Component: Everything
unspecified
PC Linux
: Normal normal
: ---
Assigned To: Lachele Foley
Depends on:
Blocks:
  Show dependency treegraph
 
Reported: 2014-04-03 07:54 UTC by Oliver Grant
Modified: 2014-04-18 10:37 UTC (History)
1 user (show)

See Also:
Difficulty Level: ---


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Description Oliver Grant 2014-04-03 07:54:54 UTC
http://glycam.ccrc.uga.edu/ccrc/users/download14.jsp?projectName=glycam_4_3_2014_780&isWarning=false

Your project name is: glycam_4_3_2014_780

These files are appropriate for AMBER 8-10. AMBER 11 is not yet supported on GlycamWeb. If you need to use AMBER 11, please contact glycam@gmail.com for assistance.

The current Glycam version is : Glycam_06_G

The carbohydrate sequence you built	is : 
A-D-Manp-(1-2)-A-D-Manp-(1-6)-[A-D-Manp-(1-3)]-A-D-Manp-(1-6)-[A-D-Manp-(1-2)-A-D-Manp-(1-2)-[A-D-Manp-(1-2)-A-D-Manp-(1-6)]-A-D-Manp-(1-3)]-B-D-Manp-(1-4)-B-D-GlcpNAc-(1-4)-B-D-GlcpNAc-(1-1)-OH

Problem: The files (Formatted PDB and Formatted pdb no hydrogen) for gt_gt_gt are empty. Minimal PDB is fine. All other rotamers are fine.
Comment 1 Lachele Foley 2014-04-03 10:37:08 UTC
Reassigning this to legacy tools.  It might not get fixed.  We prefer to focus on the new site.
Comment 2 Lachele Foley 2014-04-18 10:37:50 UTC
We won't fix this in the legacy site.  It will be fixed in the new site.