particular_relaxation_rate

This is a package that calculates spin-spin and spin-lattice relaxation rates from trajectories.  This program can be used for well-sampled trajectories such as small molecules, and also with large molecules such as proteins and in not so well sampled trajectories.  In the latter case the ‘sphere’ approximation is used in which an artificial tumbling is added to a frame aligned trajectory.  This sphere approximation substantially improves the sampling.  The software has been successfully used with work on the skp1 protein.

 

How to obtain the program

Click the green arrow in the graphic below to download the program files. Click on “DETAILS” to view additional information about the program.

particular_relaxation_rate
particular_relaxation_rate
particular_relaxation_rate.tar_.gz
Version: 1.0
107.9 MiB
101 Downloads
Details

The program is also available for download here:

Software Downloads

Associated Publication

Glycosylation associated with O2-sensing modulates the F-box combining site of Dictyostelium Skp1, JBC,

Installation

Installation instructions are included in the download referenced at the top of this page.

Usage

Use instructions are included in the download referenced at the top of this page.

Click the green arrow in the graphic below to download the program files. Click on “DETAILS” to view additional information about the program.

This program uses Amber trajectories to calculate average 3J couplings.  It also produces histograms of 3-bond torsion angles from -180 to 180 degrees from the trajectories.  There are several types of options that the program can use.

 

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