# Generate Psi and Phi for plots 
trajin TESTBRIDGE/TEST_Bridge-no4Way_2.mdcrd

# Protein 
dihedral Phi_4-5 :4@C :5@N :5@CA :5@C out TESTBRIDGE/PhiPsi_TEST_Bridge-no4Way_2_cpptraj.out 
dihedral Psi_5-6 :5@N :5@CA :5@C :6@N out TESTBRIDGE/PhiPsi_TEST_Bridge-no4Way_2_cpptraj.out 
# Sugar 
dihedral PhiS_5 :13@O5 :13@C1 :5@OG1 :5@CB out TESTBRIDGE/PhiPsi_TEST_Bridge-no4Way_2_cpptraj.out 
dihedral PsiS_5 :13@C1 :5@OG1 :5@CB  :5@CA out TESTBRIDGE/PhiPsi_TEST_Bridge-no4Way_2_cpptraj.out 

go
