# Generate Psi and Phi for plots 
trajin ../2/prod_all_fixed.crd

# Protein 
dihedral Phi_3-4 :3@C :4@N :4@CA :4@C out ANGLES/PhiPsi_t2.dat 
dihedral Psi_4-5 :4@N :4@CA :4@C :5@N out ANGLES/PhiPsi_t2.dat 
dihedral Phi_4-5 :4@C :5@N :5@CA :5@C out ANGLES/PhiPsi_t2.dat 
dihedral Psi_5-6 :5@N :5@CA :5@C :6@N out ANGLES/PhiPsi_t2.dat 
dihedral Phi_5-6 :5@C :6@N :6@CA :6@C out ANGLES/PhiPsi_t2.dat 
dihedral Psi_6-7 :6@N :6@CA :6@C :7@N out ANGLES/PhiPsi_t2.dat 
dihedral Phi_6-7 :6@C :7@N :7@CA :7@C out ANGLES/PhiPsi_t2.dat 
dihedral Psi_7-8 :7@N :7@CA :7@C :8@N out ANGLES/PhiPsi_t2.dat 
# Sugar 
dihedral PhiS_4 :12@O5 :12@C1 :4@OG1 :4@CB out ANGLES/PhiPsi_t2.dat 
dihedral PsiS_4 :12@C1 :4@OG1 :4@CB  :4@CA out ANGLES/PhiPsi_t2.dat 
dihedral PhiS_5 :13@O5 :13@C1 :5@OG1 :5@CB out ANGLES/PhiPsi_t2.dat 
dihedral PsiS_5 :13@C1 :5@OG1 :5@CB  :5@CA out ANGLES/PhiPsi_t2.dat 
dihedral PhiS_6 :14@O5 :14@C1 :6@OG1 :6@CB out ANGLES/PhiPsi_t2.dat 
dihedral PsiS_6 :14@C1 :6@OG1 :6@CB  :6@CA out ANGLES/PhiPsi_t2.dat 
dihedral PhiS_7 :15@O5 :15@C1 :7@OG1 :7@CB out ANGLES/PhiPsi_t2.dat 
dihedral PsiS_7 :15@C1 :7@OG1 :7@CB  :7@CA out ANGLES/PhiPsi_t2.dat 

go
