# Generate RMSDs for THR backbone and for Sugar heavy atoms
trajin ../37/prod_all_fixed.crd
reference ../input/1.rst7 [ref1]
rms Back_1 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref1] 

reference ../input/2.rst7 [ref2]
rms Back_2 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref2] 

reference ../input/3.rst7 [ref3]
rms Back_3 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref3] 

reference ../input/4.rst7 [ref4]
rms Back_4 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref4] 

reference ../input/5.rst7 [ref5]
rms Back_5 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref5] 

reference ../input/6.rst7 [ref6]
rms Back_6 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref6] 

reference ../input/7.rst7 [ref7]
rms Back_7 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref7] 

reference ../input/8.rst7 [ref8]
rms Back_8 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref8] 

reference ../input/9.rst7 [ref9]
rms Back_9 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref9] 

reference ../input/10.rst7 [ref10]
rms Back_10 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref10] 

reference ../input/11.rst7 [ref11]
rms Back_11 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref11] 

reference ../input/12.rst7 [ref12]
rms Back_12 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref12] 

reference ../input/13.rst7 [ref13]
rms Back_13 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref13] 

reference ../input/14.rst7 [ref14]
rms Back_14 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref14] 

reference ../input/15.rst7 [ref15]
rms Back_15 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref15] 

reference ../input/16.rst7 [ref16]
rms Back_16 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref16] 

reference ../input/17.rst7 [ref17]
rms Back_17 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref17] 

reference ../input/18.rst7 [ref18]
rms Back_18 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref18] 

reference ../input/19.rst7 [ref19]
rms Back_19 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref19] 

reference ../input/20.rst7 [ref20]
rms Back_20 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref20] 

reference ../input/21.rst7 [ref21]
rms Back_21 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref21] 

reference ../input/22.rst7 [ref22]
rms Back_22 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref22] 

reference ../input/23.rst7 [ref23]
rms Back_23 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref23] 

reference ../input/24.rst7 [ref24]
rms Back_24 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref24] 

reference ../input/25.rst7 [ref25]
rms Back_25 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref25] 

reference ../input/26.rst7 [ref26]
rms Back_26 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref26] 

reference ../input/27.rst7 [ref27]
rms Back_27 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref27] 

reference ../input/28.rst7 [ref28]
rms Back_28 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref28] 

reference ../input/29.rst7 [ref29]
rms Back_29 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref29] 

reference ../input/30.rst7 [ref30]
rms Back_30 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref30] 

reference ../input/31.rst7 [ref31]
rms Back_31 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref31] 

reference ../input/32.rst7 [ref32]
rms Back_32 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref32] 

reference ../input/33.rst7 [ref33]
rms Back_33 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref33] 

reference ../input/34.rst7 [ref34]
rms Back_34 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref34] 

reference ../input/35.rst7 [ref35]
rms Back_35 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref35] 

reference ../input/36.rst7 [ref36]
rms Back_36 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref36] 

reference ../input/37.rst7 [ref37]
rms Back_37 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref37] 

reference ../input/38.rst7 [ref38]
rms Back_38 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref38] 

reference ../input/39.rst7 [ref39]
rms Back_39 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref39] 

reference ../input/40.rst7 [ref40]
rms Back_40 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref40] 

reference ../input/41.rst7 [ref41]
rms Back_41 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref41] 

reference ../input/42.rst7 [ref42]
rms Back_42 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref42] 

reference ../input/43.rst7 [ref43]
rms Back_43 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref43] 

reference ../input/44.rst7 [ref44]
rms Back_44 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref44] 

reference ../input/45.rst7 [ref45]
rms Back_45 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref45] 

reference ../input/46.rst7 [ref46]
rms Back_46 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref46] 

reference ../input/47.rst7 [ref47]
rms Back_47 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref47] 

reference ../input/48.rst7 [ref48]
rms Back_48 :4-7&@CA,C,O,N,H out RMSD/Back_rmsd_t37_r-all.dat ref [ref48] 

go
