Monthly Archives: July 2015

PDBSugarID

Description This routine wraps the script detect_sugars, which detects cyclic (5- or 6-member ring) saccharide residues in PDB files.   Use of this routine will result in user-friendly output.  The detailed, unfriendly, output from detect_sugars (see ‘See Also’, below) can be preserved if that is desired. Usage

where: PDB_file.pdb is a properly formatted PDB file […]

detect_sugars

Description This routine detects cyclic (5- or 6-member ring) saccharide residues in PDB files.  The output is intended for use with other computer programs.  Humans can read the output, but in general, they will not find it pleasant.  Please see the ‘See Also’ section, below. Usage

The output goes to standard out (your terminal […]