Glycoprotein Builder
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Loading Structure
Project Status: Fetching requested files.
Protein File: Dar6I192F_align_cutnoTer.pdb
Additional Glycan Shapes: 0
Resolved Shapes: 0
Rejected Shapes: 0
Total Shapes Generated: 0
Random Seed: 12345
Overlap Rejection Threshold: 2.0
Prepare for MD: True
Move Overlapping Protein Sidechains: False
Delete Unresolvable Glycans: False
Retain Initial Glycosite Conformation: False
User Project ID: 9a7a28fd-d888-4cf5-a289-210b586f73d4
Build pUUID: f46d7d2e-1411-4efa-bebf-8c2ab1e09a32
Evaluation pUUID: f46d7d2e-1411-4efa-bebf-8c2ab1e09a32
For the default structure, the algorithm will try to resolve any carbohydrate-protein steric overlaps while staying as close as possible to the most likely glycosidic torsion angles. In addition, if the user selects "Retain Initial Glycosite Orientation", the torsion angles of the amino acid side chain of the glycosite will not be altered.
Resource Type: file
Upload ID:
Upload File: 9afd352b-9235-45ee-83b5-e329ef70eed6

24 Attachments

Chain: A
Residue Number: 45
Insertion Code:
Sequence Context: VQ_N_SS
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: A
Residue Number: 63
Insertion Code:
Sequence Context: GG_N_CT
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: A
Residue Number: 122
Insertion Code:
Sequence Context: FK_N_ES
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: A
Residue Number: 126
Insertion Code:
Sequence Context: SF_N_WT
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: A
Residue Number: 133
Insertion Code:
Sequence Context: KQ_N_GT
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: A
Residue Number: 165
Insertion Code:
Sequence Context: AQ_N_VT
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: A
Residue Number: 246
Insertion Code:
Sequence Context: LI_N_ST
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: A
Residue Number: 285
Insertion Code:
Sequence Context: TP_N_GS
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: G
Residue Number: 45
Insertion Code:
Sequence Context: VQ_N_SS
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: G
Residue Number: 63
Insertion Code:
Sequence Context: GG_N_CT
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: G
Residue Number: 122
Insertion Code:
Sequence Context: FK_N_ES
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: G
Residue Number: 126
Insertion Code:
Sequence Context: SF_N_WT
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: G
Residue Number: 133
Insertion Code:
Sequence Context: KQ_N_GT
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: G
Residue Number: 165
Insertion Code:
Sequence Context: AQ_N_VT
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: G
Residue Number: 246
Insertion Code:
Sequence Context: LI_N_ST
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: G
Residue Number: 285
Insertion Code:
Sequence Context: TP_N_GS
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: H
Residue Number: 45
Insertion Code:
Sequence Context: VQ_N_SS
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: H
Residue Number: 63
Insertion Code:
Sequence Context: GG_N_CT
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: H
Residue Number: 122
Insertion Code:
Sequence Context: FK_N_ES
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: H
Residue Number: 126
Insertion Code:
Sequence Context: SF_N_WT
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: H
Residue Number: 133
Insertion Code:
Sequence Context: KQ_N_GT
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: H
Residue Number: 165
Insertion Code:
Sequence Context: AQ_N_VT
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: H
Residue Number: 246
Insertion Code:
Sequence Context: LI_N_ST
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Chain: H
Residue Number: 285
Insertion Code:
Sequence Context: TP_N_GS
Sequence: DManpa1-6[DManpa1-3]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH